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GrainGenes Marker Report: k02004

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Locus	k02004
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 229.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags11i15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/T SNP structure (UNICODE) = TCACCAGACTYGCAAGCCTGT Parent 1 SNP sequence = TCACCAGACTCGCAAGCCTGT Parent 2 SNP sequence = TCACCAGACTTGCAAGCCTGT SNP = C/G SNP structure (UNICODE) = GAGGGGTCGCSACATGGACAT Parent 1 SNP sequence = GAGGGGTCGCCACATGGACAT Parent 2 SNP sequence = GAGGGGTCGCGACATGGACAT SNP = A/G SNP structure (UNICODE) = ATGAGGGGTCRCAACGTGGAC Parent 1 SNP sequence = ATGAGGGGTCACAACGTGGAC Parent 2 SNP sequence = ATGAGGGGTCGCAACGTGGAC
Probe for Locus	bags11i15
Locus	k02004
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = histone deacetylase 2 isoform b [Zea mays]
Type	PCR
PCR primers	Left 5' - GGCCCTAGCCAAGCTAAAAA Right 5' - AGTGGAAACCACTCTGCACC
Sequence	BJ468674
PCR size	397