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GrainGenes Marker Report: k01528

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Locus	k01528
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 86.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal9m23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XspI SNP = C/T SNP structure (UNICODE) = CCTGTTTCCTYGACAGGAAAT Parent 1 SNP sequence = CCTGTTTCCTCGACAGGAAAT Parent 2 SNP sequence = CCTGTTTCCTTGACAGGAAAT Recognized sequence for CAPs locus = CTAG
Probe for Locus	baal9m23
Locus	k01528
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] pir H84522 hypothetical protein At2g14910 [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - ATGCGCACAGAAGAAACCTT Right 5' - AAACATGCAACGATGAGCAG
Sequence	AV833030
PCR size	372