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GrainGenes Marker Report: k01412

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Locus	k01412
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 233
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal5i05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = T/G SNP structure (UNICODE) = TGAGCTTGTCKCGCTTGGACC Parent 1 SNP sequence = TGAGCTTGTCTCGCTTGGACC Parent 2 SNP sequence = TGAGCTTGTCGCGCTTGGACC Recognized sequence for CAPs locus = GCGC
Probe for Locus	baal5i05
Locus	k01412
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] dbj BAB11302.1 unnamed protein product [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TCTAGCGGACAGCTAAACAGC Right 5' - CCATCCTCATCACCCTCACT
Sequence	AV936694
PCR size	436