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GrainGenes Marker Report: k01369

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Locus	k01369
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 147.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal41l18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 28 ] SNP = A/G SNP structure (UNICODE) = GCCATCTAATRGTATTAGCAT Parent 1 SNP sequence = GCCATCTAATAGTATTAGCAT Parent 2 SNP sequence = GCCATCTAATGGTATTAGCAT SNP = T/C SNP structure (UNICODE) = TCCTCTTTCTYCCTTCTCCTT Parent 1 SNP sequence = TCCTCTTTCTTCCTTCTCCTT Parent 2 SNP sequence = TCCTCTTTCTCCCTTCTCCTT SNP = G/A SNP structure (UNICODE) = ATATCTATTCRCAGGTAAGAC Parent 1 SNP sequence = ATATCTATTCGCAGGTAAGAC Parent 2 SNP sequence = ATATCTATTCACAGGTAAGAC SNP structure (UNICODE) = TTAAACAGGARAGATAGAGAG Parent 1 SNP sequence = TTAAACAGGAAAGATAGAGAG Parent 2 SNP sequence = TTAAACAGGAGAGATAGAGAG SNP = T/G SNP structure (UNICODE) = GTGTTACTGGKTACTTATCAT Parent 1 SNP sequence = GTGTTACTGGTTACTTATCAT Parent 2 SNP sequence = GTGTTACTGGGTACTTATCAT SNP structure (UNICODE) = GTACTACCAGKTAGCCGCCAT Parent 1 SNP sequence = GTACTACCAGTTAGCCGCCAT Parent 2 SNP sequence = GTACTACCAGGTAGCCGCCAT SNP structure (UNICODE) = ATAGAGAGAGKTTTATTTATA Parent 1 SNP sequence = ATAGAGAGAGTTTTATTTATA Parent 2 SNP sequence = ATAGAGAGAGGTTTATTTATA SNP structure (UNICODE) = TTGACAACTARTTATATCTAT Parent 1 SNP sequence = TTGACAACTAGTTATATCTAT Parent 2 SNP sequence = TTGACAACTAATTATATCTAT
Probe for Locus	baal41l18
Locus	k01369
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0086B14.7 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCCCCAAAGGAAAGAACAGT Right 5' - ATGGAGGGAGGAGGAGGTAG
Sequence	BJ477502
PCR size	399