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GrainGenes Marker Report: k01301

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Locus	k01301
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 250.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal39f20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = NcoI SNP = T/C SNP structure (UNICODE) = ACCGGCACCAYGGCTAAGATC Parent 1 SNP sequence = ACCGGCACCATGGCTAAGATC Parent 2 SNP sequence = ACCGGCACCACGGCTAAGATC Recognized sequence for CAPs locus = CCATGG
Probe for Locus	baal39f20
Locus	k01301
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = probable EREBP-4 - Arabidopsis thaliana emb CAB10530.1 EREBP-4 like protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ATCAAGCGAAACCTGTGTGA Right 5' - CTCAAGGGTCTGTACCCTGC
Sequence	BJ477019
PCR size	442