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GrainGenes Marker Report: k01292

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Locus	k01292
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 99.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal3f19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = C/T SNP structure (UNICODE) = TGCCTCCTTTYCCCGATAGGC Parent 1 SNP sequence = TGCCTCCTTTCCCCGATAGGC Parent 2 SNP sequence = TGCCTCCTTTTCCCGATAGGC SNP = G/A SNP structure (UNICODE) = TCGTATCAGCRATAACTATGC Parent 1 SNP sequence = TCGTATCAGCGATAACTATGC Parent 2 SNP sequence = TCGTATCAGCAATAACTATGC SNP = C/A SNP structure (UNICODE) = GTATGTGGATMTTCGTATCAG Parent 1 SNP sequence = GTATGTGGATCTTCGTATCAG Parent 2 SNP sequence = GTATGTGGATATTCGTATCAG SNP = T/A SNP structure (UNICODE) = ACAGGTCATCWAGACGAAGCA Parent 1 SNP sequence = ACAGGTCATCTAGACGAAGCA Parent 2 SNP sequence = ACAGGTCATCAAGACGAAGCA SNP = A/T SNP structure (UNICODE) = AATCCCTGGCWACCTTGATGT Parent 1 SNP sequence = AATCCCTGGCAACCTTGATGT Parent 2 SNP sequence = AATCCCTGGCTACCTTGATGT
Probe for Locus	baal3f19
Locus	k01292
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0415A04.33 [Oryza sativa (japonica cultivar-group)] dbj BAB89768.1 P0557A01.6 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACGAAAGCTAGCAGGCCATA Right 5' - CGTCTGAACAGGCTTCCTTC
Sequence	AV935228
PCR size	427