Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k01133

[Submit comment/correction]

Locus	k01133
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 263.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal24n12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/A SNP structure (UNICODE) = GCGCGCGACTWATAACTTGTT Parent 1 SNP sequence = GCGCGCGACTTATAACTTGTT Parent 2 SNP sequence = GCGCGCGACTAATAACTTGTT SNP = C/T SNP structure (UNICODE) = TGATACATTAYGCAAAGAAAT Parent 1 SNP sequence = TGATACATTACGCAAAGAAAT Parent 2 SNP sequence = TGATACATTATGCAAAGAAAT
Probe for Locus	baal24n12
Locus	k01133
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0431G06.3 [Oryza sativa (japonica cultivar-group)] dbj BAB64692.1 P0431G06.3 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAACTTGTGTTGCCGAATTG Right 5' - CAGGTGAGCAGACATAGCCA
Sequence	BJ475313
PCR size	411