Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k01113

[Submit comment/correction]

Locus	k01113
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 124.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal27m03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = N/G SNP structure (UNICODE) = AAACAGGGGAN/GAGGGACAACC Parent 1 SNP sequence = AAACAGGGGANAGGGACAACC Parent 2 SNP sequence = AAACAGGGGAGAGGGACAACC SNP = C/T SNP structure (UNICODE) = CTTTCACCGTYTGAGGGCATG Parent 1 SNP sequence = CTTTCACCGTCTGAGGGCATG Parent 2 SNP sequence = CTTTCACCGTTTGAGGGCATG SNP = N/A SNP structure (UNICODE) = GCTCAGCTGCN/AAGGAAAATAA Parent 1 SNP sequence = GCTCAGCTGCNAGGAAAATAA Parent 2 SNP sequence = GCTCAGCTGCAAGGAAAATAA SNP = N/C SNP structure (UNICODE) = GGGCATCAGCN/CGATCGAGCTA Parent 1 SNP sequence = GGGCATCAGCNGATCGAGCTA Parent 2 SNP sequence = GGGCATCAGCCGATCGAGCTA SNP = G/T SNP structure (UNICODE) = TCATATCACTKATTGGGGAAC Parent 1 SNP sequence = TCATATCACTGATTGGGGAAC Parent 2 SNP sequence = TCATATCACTTATTGGGGAAC
Probe for Locus	baal27m03
Locus	k01113
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = phosphoribosyl pyrophosphate synthetase [Saccharum hybrid cultivar]
Type	PCR
PCR primers	Left 5' - GAAGCTCTCCTAATGGCACG Right 5' - GGCGTCGTTATGTTGGAACT
Sequence	BJ475030
PCR size	413