Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k01024

[Submit comment/correction]

Locus	k01024
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 75.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal18c19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 13 ] Restriction enzyme used for CAPS analysis = EcoRI SNP = -/C SNP structure (UNICODE) = AAAAGGGTAC-/CGTTTGATGTA Parent 1 SNP sequence = AAAAGGGTAC-GTTTGATGTA Parent 2 SNP sequence = AAAAGGGTACCGTTTGATGTA SNP = N/T SNP structure (UNICODE) = AGGATCTTGGN/TTATAACCTCT Parent 1 SNP sequence = AGGATCTTGGNTATAACCTCT Parent 2 SNP sequence = AGGATCTTGGTTATAACCTCT SNP = -/A SNP structure (UNICODE) = GTGCAATGCA-/ATTTCTACAAA Parent 1 SNP sequence = GTGCAATGCA-TTTCTACAAA Parent 2 SNP sequence = GTGCAATGCAATTTCTACAAA
Probe for Locus	baal18c19
Locus	k01024
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = biogenesis protein [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - TGTGCACAAACTTCTCCAGG Right 5' - GATGAAGCAAAGAAGGCCAG
Sequence	BJ473998
PCR size	424