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GrainGenes Marker Report: k01015

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Locus	k01015
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 138.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal19b12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = T/C SNP structure (UNICODE) = TAGTGCATCTYTTGCAATGGC Parent 1 SNP sequence = TAGTGCATCTTTTGCAATGGC Parent 2 SNP sequence = TAGTGCATCTCTTGCAATGGC SNP = G/A SNP structure (UNICODE) = TTACATGATARGGTCATTACC Parent 1 SNP sequence = TTACATGATAGGGTCATTACC Parent 2 SNP sequence = TTACATGATAAGGTCATTACC SNP structure (UNICODE) = TAGAGTATCARATGGAAATAT Parent 1 SNP sequence = TAGAGTATCAGATGGAAATAT Parent 2 SNP sequence = TAGAGTATCAAATGGAAATAT SNP structure (UNICODE) = TTCATGAGTTYACAATTATTT Parent 1 SNP sequence = TTCATGAGTTTACAATTATTT Parent 2 SNP sequence = TTCATGAGTTCACAATTATTT SNP structure (UNICODE) = ATAGAATCCARAGTGTCAACT Parent 1 SNP sequence = ATAGAATCCAGAGTGTCAACT Parent 2 SNP sequence = ATAGAATCCAAAGTGTCAACT SNP structure (UNICODE) = TGGAAATATTRTAAATGACGA Parent 1 SNP sequence = TGGAAATATTGTAAATGACGA Parent 2 SNP sequence = TGGAAATATTATAAATGACGA SNP structure (UNICODE) = TGACGAAATARAGTACACAGC Parent 1 SNP sequence = TGACGAAATAGAGTACACAGC Parent 2 SNP sequence = TGACGAAATAAAGTACACAGC
Probe for Locus	baal19b12
Locus	k01015
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = At4g21470 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ATTCAGGAAAGCGTACGGAA Right 5' - CCCTGGCCATTGTAAGAAAA
Sequence	BJ474112
PCR size	412