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GrainGenes Marker Report: k00900

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Locus	k00900
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 14.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal16i24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = ClaI SNP = G/C SNP structure (UNICODE) = ATCCATCATGSCAGCTCATAC Parent 1 SNP sequence = ATCCATCATGGCAGCTCATAC Parent 2 SNP sequence = ATCCATCATGCCAGCTCATAC Recognized sequence for CAPs locus = ATCGAT
Probe for Locus	baal16i24
Locus	k00900
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hydroxypyruvate reductase [Bruguiera gymnorrhiza]
Type	PCR
PCR primers	Left 5' - GATTGCAGGATTACATGCGA Right 5' - TTGCTGACCTTCTGTGATCG
PCR size	442