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GrainGenes Marker Report: k00879

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Locus	k00879
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 126.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baal11c20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = T/A SNP structure (UNICODE) = TTGCTACGAAWCCAAGAGAAA Parent 1 SNP sequence = TTGCTACGAATCCAAGAGAAA Parent 2 SNP sequence = TTGCTACGAAACCAAGAGAAA Recognized sequence for CAPs locus = GANTC
Probe for Locus	baal11c20
Locus	k00879
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0042A10.6 [Oryza sativa (japonica cultivar-group)] dbj BAB90064.1 P0042A10.6 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGCTATACCCCATGCTCTCC Right 5' - ATGTATCGCTGACGTTGGG
Sequence	AV936396
PCR size	467