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GrainGenes Marker Report: k00824

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Locus	k00824
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 106
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak46j05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = C/T SNP structure (UNICODE) = ATTCTGAAGCYTACAGAAACA Parent 1 SNP sequence = ATTCTGAAGCCTACAGAAACA Parent 2 SNP sequence = ATTCTGAAGCTTACAGAAACA SNP structure (UNICODE) = GTATGCAAATYACATTAGAAA Parent 1 SNP sequence = GTATGCAAATCACATTAGAAA Parent 2 SNP sequence = GTATGCAAATTACATTAGAAA SNP = G/T SNP structure (UNICODE) = TTATATTGTGKTTTAACTCAT Parent 1 SNP sequence = TTATATTGTGGTTTAACTCAT Parent 2 SNP sequence = TTATATTGTGTTTTAACTCAT SNP = A/G SNP structure (UNICODE) = TAACTCATGGRAATACATGGG Parent 1 SNP sequence = TAACTCATGGAAATACATGGG Parent 2 SNP sequence = TAACTCATGGGAATACATGGG
Probe for Locus	baak46j05
Locus	k00824
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Oryza sativa (japonica cultivar-group)] gb AAP06860.1 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAGGATATGGGGTCAGGCTA Right 5' - TAGCTGGGATGATGTGGTCA
Sequence	BJ461737
PCR size	478