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GrainGenes Marker Report: k00790

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Locus	k00790
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 188.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak46o19
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/C SNP structure (UNICODE) = CAATGCTCACYTTATCTATGT Parent 1 SNP sequence = CAATGCTCACTTTATCTATGT Parent 2 SNP sequence = CAATGCTCACCTTATCTATGT SNP = C/- SNP structure (UNICODE) = GCAGCTGCAGC/-AAGCCATCTT Parent 1 SNP sequence = GCAGCTGCAGCAAGCCATCTT Parent 2 SNP sequence = GCAGCTGCAG-AAGCCATCTT SNP = N/C SNP structure (UNICODE) = GTACCCTTTTN/CCATATGTTGG Parent 1 SNP sequence = GTACCCTTTTNCATATGTTGG Parent 2 SNP sequence = GTACCCTTTTCCATATGTTGG
Probe for Locus	baak46o19
Locus	k00790
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = D1 protease precursor [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - CAAAGGGATCTCCTGGTCAA Right 5' - CGATGATCCTTTCCTTCCAG
Sequence	BJ461836
PCR size	364