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GrainGenes Marker Report: k00777

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Locus	k00777
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 209.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak46l06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AvaII SNP = T/G SNP structure (UNICODE) = GGCCGAGAGGKGTCCGGTAAA Parent 1 SNP sequence = GGCCGAGAGGTGTCCGGTAAA Parent 2 SNP sequence = GGCCGAGAGGGGTCCGGTAAA Recognized sequence for CAPs locus = GGWCC
Probe for Locus	baak46l06
Locus	k00777
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0035M09.17 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCGTCGATCAATTCAGACCT Right 5' - GAATACTGCGACGACAGCAA
Sequence	BJ461772
PCR size	419