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GrainGenes Marker Report: k00760

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Locus	k00760
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 171.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak41d01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = -/G SNP structure (UNICODE) = GATAGTTACT-/GTCTGTTATAG Parent 1 SNP sequence = GATAGTTACT-TCTGTTATAG Parent 2 SNP sequence = GATAGTTACTGTCTGTTATAG SNP = A/N SNP structure (UNICODE) = TCTTANGAGCA/NAATATCTTCA Parent 1 SNP sequence = TCTTANGAGCAAATATCTTCA Parent 2 SNP sequence = TCTTANGAGCNAATATCTTCA SNP = G/A SNP structure (UNICODE) = TTTGGCTATGRTCCACTCCAT Parent 1 SNP sequence = TTTGGCTATGGTCCACTCCAT Parent 2 SNP sequence = TTTGGCTATGATCCACTCCAT
Probe for Locus	baak41d01
Locus	k00760
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = At4g38960 [Arabidopsis thaliana] gb AAS47644.1 At4g38960 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GTTTCATGTACACGCATGGC Right 5' - AGCAGCAGATCAAGGGGTTA
Sequence	BJ460535
PCR size	413