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GrainGenes Marker Report: k00676

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Locus	k00676
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 10
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak40n12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = DdeI SNP = T/G SNP structure (UNICODE) = GGAGATATGCKGAGATCCTGC Parent 1 SNP sequence = GGAGATATGCTGAGATCCTGC Parent 2 SNP sequence = GGAGATATGCGGAGATCCTGC Recognized sequence for CAPs locus = CTNAG
Probe for Locus	baak40n12
Locus	k00676
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0024J22.3 [Oryza sativa (japonica cultivar-group)] emb CAE05121.2 OSJNBa0023J03.13 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCCATGGCGTTTACTTTTCTG Right 5' - GAATGTCTAGGTCTCTCCGGC
Sequence	BJ460446
PCR size	367