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GrainGenes Marker Report: k00643

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Locus	k00643
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 92.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak38b13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = C/G SNP structure (UNICODE) = GCAGCTTCAGSAGCTCCTCTC Parent 1 SNP sequence = GCAGCTTCAGCAGCTCCTCTC Parent 2 SNP sequence = GCAGCTTCAGGAGCTCCTCTC SNP = T/G SNP structure (UNICODE) = TCAAGAAGGAKTATACGTTTA Parent 1 SNP sequence = TCAAGAAGGATTATACGTTTA Parent 2 SNP sequence = TCAAGAAGGAGTATACGTTTA
Probe for Locus	baak38b13
Locus	k00643
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] dbj BAB09022.1 gb AAC18972.1~gene_id:K8K14.9~similar to unknown protein
Type	PCR
PCR primers	Left 5' - GTAGGTGAGGTCGCTCGAAG Right 5' - CCTCTCTCTCCATTGCCAAC
Sequence	BJ459742
PCR size	378