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GrainGenes Marker Report: k00579

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Locus	k00579
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 353.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak36a20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = A/C SNP structure (UNICODE) = TTGCTTGAGGMAGAGACGTCT Parent 1 SNP sequence = TTGCTTGAGGAAGAGACGTCT Parent 2 SNP sequence = TTGCTTGAGGCAGAGACGTCT SNP = T/C SNP structure (UNICODE) = TTTATTATTAYAACCAATCCC Parent 1 SNP sequence = TTTATTATTATAACCAATCCC Parent 2 SNP sequence = TTTATTATTACAACCAATCCC SNP = A/G SNP structure (UNICODE) = TTACTGAGGCRATGTGTACTT Parent 1 SNP sequence = TTACTGAGGCAATGTGTACTT Parent 2 SNP sequence = TTACTGAGGCGATGTGTACTT SNP = T/G SNP structure (UNICODE) = ACCAATCCCAKTTCTTCCTGC Parent 1 SNP sequence = ACCAATCCCATTTCTTCCTGC Parent 2 SNP sequence = ACCAATCCCAGTTCTTCCTGC
Probe for Locus	baak36a20
Locus	k00579
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = thioredoxin family [Arabidopsis thaliana] gb AAK28642.1 unknown protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ATCGACCCGAGTCTGCATAG Right 5' - TCGACGCAGCACTAGGAATA
Sequence	BJ459187
PCR size	396