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GrainGenes Marker Report: k00385

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Locus	k00385
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 67.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak26n10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = C/G SNP structure (UNICODE) = CTTCTTCTTTSGGATAAGAAA Parent 1 SNP sequence = CTTCTTCTTTCGGATAAGAAA Parent 2 SNP sequence = CTTCTTCTTTGGGATAAGAAA SNP = C/N SNP structure (UNICODE) = GTGTGCCTTTC/NAGTGTGTAGT Parent 1 SNP sequence = GTGTGCCTTTCAGTGTGTAGT Parent 2 SNP sequence = GTGTGCCTTTNAGTGTGTAGT SNP = -/G SNP structure (UNICODE) = TATATTTTAG-/GCCTTCATCAT Parent 1 SNP sequence = TATATTTTAG-CCTTCATCAT Parent 2 SNP sequence = TATATTTTAGGCCTTCATCAT
Probe for Locus	baak26n10
Locus	k00385
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCTCAAAACTCCAGCACGTT Right 5' - GGTTCGAATGGGTTCTTCCT
Sequence	BJ457236
PCR size	356