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GrainGenes Marker Report: k00148

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Locus	k00148
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 163.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak15l06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = TGCGGGAGGCRCGCGTGAGGA Parent 1 SNP sequence = TGCGGGAGGCACGCGTGAGGA Parent 2 SNP sequence = TGCGGGAGGCGCGCGTGAGGA SNP = A/T SNP structure (UNICODE) = CATTATTCTTWTCATCAAATC Parent 1 SNP sequence = CATTATTCTTATCATCAAATC Parent 2 SNP sequence = CATTATTCTTTTCATCAAATC
Probe for Locus	baak15l06
Locus	k00148
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] gb AAF02167.1 unknown protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CTGATATAACCGGGGTCACG Right 5' - CGACAACACAGACGCATACC
Sequence	BJ455015
PCR size	406