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GrainGenes Marker Report: k00143

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Locus	k00143
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 300.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak18c01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = G/A SNP structure (UNICODE) = ACTGCGAAGARTATGAAATTT Parent 1 SNP sequence = ACTGCGAAGAGTATGAAATTT Parent 2 SNP sequence = ACTGCGAAGAATATGAAATTT SNP = C/G SNP structure (UNICODE) = AGGAGCCGAGSGAGTTGGGGT Parent 1 SNP sequence = AGGAGCCGAGCGAGTTGGGGT Parent 2 SNP sequence = AGGAGCCGAGGGAGTTGGGGT SNP = T/C SNP structure (UNICODE) = CGTGCACAGAYCCAGAGTGGT Parent 1 SNP sequence = CGTGCACAGATCCAGAGTGGT Parent 2 SNP sequence = CGTGCACAGACCCAGAGTGGT SNP structure (UNICODE) = AGTTGGGGTCRGTTCCCCACC Parent 1 SNP sequence = AGTTGGGGTCGGTTCCCCACC Parent 2 SNP sequence = AGTTGGGGTCAGTTCCCCACC SNP = T/A SNP structure (UNICODE) = ATCTAAAGCTWTACCGGCTCG Parent 1 SNP sequence = ATCTAAAGCTTTACCGGCTCG Parent 2 SNP sequence = ATCTAAAGCTATACCGGCTCG SNP = A/G SNP structure (UNICODE) = GACATTAGCGRTTAGAACCTG Parent 1 SNP sequence = GACATTAGCGATTAGAACCTG Parent 2 SNP sequence = GACATTAGCGGTTAGAACCTG
Probe for Locus	baak18c01
Locus	k00143
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0004A17.1 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGTCATGCATCAGCTTTGAA Right 5' - CCTCACTAATCATGCGGAGC
Sequence	BJ455763
PCR size	395