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GrainGenes Marker Report: k00125

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Locus	k00125
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 101.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak15p03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = XbaI SNP = C/T SNP structure (UNICODE) = GACGAGGTGAYGGCTACTGGT Parent 1 SNP sequence = GACGAGGTGACGGCTACTGGT Parent 2 SNP sequence = GACGAGGTGATGGCTACTGGT Recognized sequence for CAPs locus = TCTAGA SNP = G/C SNP structure (UNICODE) = TACTGGTCATSGTCTGAACTC Parent 1 SNP sequence = TACTGGTCATGGTCTGAACTC Parent 2 SNP sequence = TACTGGTCATCGTCTGAACTC
Probe for Locus	baak15p03
Locus	k00125
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACGAATGTCGATTAGCAGGC Right 5' - GAAGAGGCTGCAGACAAACC
Sequence	BJ447620
PCR size	406