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GrainGenes Marker Report: k00111

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Locus	k00111
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 61.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak14o13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = G/T SNP structure (UNICODE) = ACAGATCAGGKTAAGGCATTT Parent 1 SNP sequence = ACAGATCAGGGTAAGGCATTT Parent 2 SNP sequence = ACAGATCAGGTTAAGGCATTT SNP = C/T SNP structure (UNICODE) = CAATTTACAAYCTTCCAAAGA Parent 1 SNP sequence = CAATTTACAACCTTCCAAAGA Parent 2 SNP sequence = CAATTTACAATCTTCCAAAGA SNP structure (UNICODE) = GGGGCATGACYAATATGAACA Parent 1 SNP sequence = GGGGCATGACCAATATGAACA Parent 2 SNP sequence = GGGGCATGACTAATATGAACA
Probe for Locus	baak14o13
Locus	k00111
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Similar to 1-aminocyclopropane-1-carboxylate synthase (U35779) [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CATGCGAGATTAACCGGAAG Right 5' - GATGAAAGGTGAGCTCCTCG
Sequence	BJ454815
PCR size	383