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GrainGenes Marker Report: k00029

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Locus	k00029
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 172.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	baak12d06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = A/G SNP structure (UNICODE) = CACCAAATCGRCGCAGCAAGG Parent 1 SNP sequence = CACCAAATCGACGCAGCAAGG Parent 2 SNP sequence = CACCAAATCGGCGCAGCAAGG Recognized sequence for CAPs locus = GCGC
Probe for Locus	baak12d06
Locus	k00029
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = timing of CAB expression 1-like protein [Brassica rapa subsp. pekinensis]
Type	PCR
PCR primers	Left 5' - CATTTTGTCCTCCGGCTTTA Right 5' - TCTCTGCCAAAGAAGTGGCT
Sequence	BJ455330
PCR size	459