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GrainGenes Marker Report: bcd808b

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Locus	bcd808b
Type	RFLP SNP
Synonym	Synonym BCD808
Chromosome	4A 4H 5H
Map	Barley-consensus-2003-4H 14 [ Show all 18 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QBYD.OM-QTL3_7 QHD.OxM-QTL1_7 QHT.OxM-QTL1_7.2 QNLGC.2002-OxT_10 QVERN.2002-OxT_10
Map Data	[ Hide all but 1 of 19 ] Barley consensus 2003 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Integrated, Marcel 2009 Barley, OPA 2009, Consensus Barley, Pilot OPA1, Consensus Barley, Steptoe x Morex, SNP Oat, KxO, 2003 Oat, OxT Oat-2002-OxT-QTL Oat-2003-OglexMAM17-5 Oat-2003-OxM-QTL1 Oat-2003-OxM-QTL3 Oat-2004-OxM-QTL4 Oat-2013-KxO-RGA Wheat chromosome arm map
Probe	BCD808
Homology	NP_013059.1 e-value: 2.9 Succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit; Sdh2p [Saccharomyces cerevisiae] MITOCHONDRIAL PRECURSOR (IP) protein precursor - yeast (Saccharomyces cerevisiae) 1.3.99.1) [Saccharomyces cerevisiae] TBA_WHEAT e-value: 9e-50 TUBULIN ALPHA CHAIN
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Close, Timothy J. Langridge, Peter J.
Remark	Number of populations contributing to the placement of BCD808b in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Marker placement value = 0.00 cM on map Oat-KxO/2003-24_26_34 Marker is a framework marker on map Oat-KxO/2003-24_26_34
Possible Orthologs	BCD808 [ Show all 28 ]
Probe for Locus	BCD808
Locus	Xbcd808-1 [ Show all 46 ]
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Lambda ZAP II library Bar.LambZAPII [c]
Type	cDNA
Sequence	BE438617 BE438742 BCD808_WHE1G0031 BCD808_WHE1G0032
Polymorphism	BCD808 EcoRV BCD808 EcoRI
Linkage Group	1L, 4L
Insert Enzyme	EcoRI
Source Species	Hordeum vulgare
Source Germplasm	Willis
Source Tissue	etiolated leaf
Insert Size	0.8
PCR size	0.8