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GrainGenes Marker Report: alm (Hordeum)

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Gene	alm (Hordeum)
Full Name	Albino lemma
Synonym	Synonym al (Hordeum) von Wettstein-Knowles P (1993) Barley (Hordeum vulgare) 2N = 14. Genetic maps: Locus Maps of Complex Genomes.
Gene Class	Albino lemma
Allele	Alm (Hordeum) alm (Hordeum)
Locus	abg471 alm
Chromosome	3H
Image	Barley, alm (albino lemma) phenotype Barley, Alm (green lemma) phenotype
Data Source	Franckowiak, Jerome D. 96.10
Locus Associated with Gene	abg471
Type	RFLP STS
Synonym	Synonym alm (Hordeum) POPA3_0431
Chromosome	3H
Chromosome Arm	3HS
Map	Barley-Consensus-3H -19 [ Show all 23 ]
	[ Show Nearby Loci ]
In QTL	QBgnm.StMo-3H QCww.StMo-3H QHd.HaMo-3H QHt.HaMo-3H.1 QHt.HaMo-3H.2
Map Data	[ Hide all but 1 of 22 ] 3B Physical Barley consensus Barley consensus 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, AxK Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, GxH Barley, HxT Barley, HxT basemap Barley, Integrated, Marcel 2009 Barley, KxM Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, Steptoe x Morex, SSR Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs Wheat, Yr genes and QTL
Probe	ABG471
Associated Gene	alm (Hordeum)
Gene Class	Albino lemma
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527. Li JZ et al. (2003) Development and genetic mapping of 127 new microsatellite markers in barley Theoretical and Applied Genetics 107:1021-1027. Kleinhofs A (1997) Integrating Barley RFLP and Classical Marker Maps: Barley Genetics Newsletter 27:105.
Data Source	Blake, Tom 05.04.19
Remark	Number of populations contributing to the placement of ABG471 in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Possible Orthologs	ABG471-3H [ Show all 9 ]
Locus Associated with Gene	alm
Type	Gene
Synonym	Synonym alm (Hordeum)
Chromosome	3H
Map	Hordeum-Bins-3H 36 [ Show all 10 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 10 ] Barley genes 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, OWB Barley, OWB, 2004 Barley, OWB, 2005 Barley, OWB, OPA2008 Barley, OWB, SNP
Species	Hordeum vulgare
Associated Gene	alm (Hordeum)
Gene Class	Albino lemma
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Kleinhofs, Andris
Remark	This marker is a Binlocus in the Hordeum-Bins maps, i.e. a marker mapped in other crosses and located to the Steptoe x Morex bin
Locus	alm (Hordeum)
Synonym	Synonym abg471 alm

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