GrainGenes Marker Report: Xcfd79-3B
Locus
Xcfd79-3B
Type
Microsatellite
Chromosome
3B
Map
Chinese_Spring_Deletion_SSR_3B -0.165 Conan/Reeder-3B 30.0949 Kofa/UC1113-3B 22 Ta-Courtot/CS-GPW-3B 41.2 Ta-SSR-2004-3B 14.5
[ Show Nearby Loci ]
Breakpoint Interval
C-3BS1-0.33
Map Data
Durum wheat, Kofa x UC1113 Wheat, Conan x Reeder Wheat, Consensus SSR, 2004 Wheat, Courtot x Chinese Spring, GPW Wheat, Physical, SSR
Probe
CFD79
Reference
Somers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
[ Hide all but 1 of 15 ] cfd79 Xcfd79-3A Xcfd79-3B.1 Xcfd79-3B.2 Xcfd79-3D Xcfd79.1 Xcfd79.2 Xcfd79.2-3A Xcfd79.2-3B Xcfd79.3-3B Xcfd79a Xcfd79b cfd79-3B Xcfd79 cfd79-3A
Probe for Locus
CFD79
Locus
Xcfd79-3B
[ Show all 16 ]
Reference
General Remarks
Quality Score = D Quality scores reflect the quality of amplification (from A very good quality to D multiple banding pattern : A and B can be used on capillary systems) Amplifies motif: (GA)26 Regularity of motif is perfect
Type
PCR SSR
PCR primers
Forward 5' TCTGGTTCTTGGGAGGAAGA 3'
Reverse 5' CATCCAACAATTTGCCCAT 3'
SSR size
284
Amplification Conditions
5 minutes at 94 degrees; 30 cycles (94 degrees for 30 seconds; 60 degrees for 30 seconds; 72 degrees for 30 seconds); 10 minutes at 72 degrees
Linkage Group
3D/3B
Source Species
Aegilops tauschii
GrainGenes Marker Report: Xcfd79-3B
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