Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Xcfa2170-3A

[Submit comment/correction]

Locus	Xcfa2170-3A
Type	Microsatellite
Map	P91193D1/P92201D5-3A 126.9 T.b.xT.m.-3A 202.4 Wheat, UC1110 x PI610750 3A 143.7 Wheat_Brittle_culm_2012-3A 3.7
	[ Show Nearby Loci ]
Map Data	T. boeoticum x monococcum Wheat, 2012, Brittle culm Wheat, P91193D1 x P92201D5 Wheat, UC1110 x PI610750
Probe	CFA2170
Reference	Lowe I et al. (2011) Mapping and validation of QTL which confer partial resistance to broadly virulent post-2000 North American races of stripe rust in hexaploid wheat Theoretical and Applied Genetics 123:143-157.
Possible Orthologs	[ Hide all but 1 of 8 ] cfa2170 Xcfa2170-1D Xcfa2170-3A.1 Xcfa2170-3A.2 Xcfa2170-3B Xcfa2170a cfa2170-3A cfa2170-3B
Probe for Locus	CFA2170
Locus	Xcfa2170-3B [ Show all 10 ]
Reference	Sourdille P et al. (2001) Improvement of the genetic maps of wheat using new microsatellite markers Plant & Animal Genome IX Abstracts 167.
General Remarks	Quality Score = B Quality scores reflect the quality of amplification (from A very good quality to D multiple banding pattern : A and B can be used on capillary systems) Amplifies motif: (GA)31 Regularity of motif is imperfect
Type	PCR SSR
PCR primers	Forward 5' TGGCAAGTAACATGAACGGA 3' Reverse 5' ATGTCATTCATGTTGCCCCT 3'
SSR size	199
Amplification Conditions	5 minutes at 94 degrees; 30 cycles (94 degrees for 30 seconds; 60 degrees for 30 seconds; 72 degrees for 30 seconds); 10 minutes at 72 degrees
Linkage Group	3A/3B
Source Species	Triticum urartu