GrainGenes Marker Report: Xcdo400
Locus
Xcdo400
Type
RFLP
Chromosome
5B 5D
Chromosome Arm
5DL
Map
Avena-Sorrells-E 110.6
[ Show all 13 ]
[ Show Nearby Loci ]
QTL with Locus Marker
Qbgl.KxM-Bgl_14 Qbgl.KxO-Bgl_14
Breakpoint Interval
5DL-8/5DL-9 5L-0.73-0.73
Map Data
Diploid Oat, AFLP
[ Show all 12 ]
Species
Triticum aestivum
Probe
CDO400
Homology
BAB05976.1 e-value: 1.1 (AP001514) BH2257~unknown conserved protein in B. subtilis [Bacillus halodurans] NP_113448.1 e-value: 7e-04 ubiquitin-conjugating enzyme E2-21 KD [Guillardia theta]
Image
CDO400 KO autoradiogram
Reference
Boyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs
cdo400
[ Show all 8 ]
Probe for Locus
CDO400
Locus
CDO400b
[ Show all 12 ]
Synonym
Synonym HAR35_19904
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library OatUni-ZAPXR [c]
Type
cDNA
Sequence
[ Hide all but 1 of 6 ] BE439060 BE439111 CDO400_WHE2F0062 CDO400_WHE2F0061 AA231758 AA231759
Polymorphism
CDO400 DraI
Linkage Group
1L, 5L
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
0.8
PCR size
0.8
GrainGenes Marker Report: Xcdo400
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