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GrainGenes Marker Report: Xcdo400

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Locus	Xcdo400
Type	RFLP
Chromosome	5B 5D
Chromosome Arm	5DL
Map	[ Hide all but 1 of 13 ] Avena-Sorrells-E 110.6 Avena-Yu-E 593.4 Oat-2000-KxM-Bgl_14 0 Oat-2000-KxO-Bgl_14 0 Oat-2001-KxM-QTL_14 24 Oat-2003-OglexMAM17-5_11 16 Oat-2003-OxM-QTL1_11 17.1 Oat-2004-KxO-RGA_KO14 14.12 Oat-2004-SxW-RGA_AswBF 131.79 Oat-KxO-14 22.5 Ta-Physical-Gill-5ABD 73 Ta-Physical-Gill-5D 4.81 Wheat-Composite2004-5B 68
	[ Show Nearby Loci ]
QTL with Locus Marker	Qbgl.KxM-Bgl_14 Qbgl.KxO-Bgl_14
Breakpoint Interval	5DL-8/5DL-9 5L-0.73-0.73
Map Data	Diploid Oat, AFLP [ Show all 12 ]
Species	Triticum aestivum
Probe	CDO400
Homology	BAB05976.1 e-value: 1.1 (AP001514) BH2257~unknown conserved protein in B. subtilis [Bacillus halodurans] NP_113448.1 e-value: 7e-04 ubiquitin-conjugating enzyme E2-21 KD [Guillardia theta]
Image	CDO400 KO autoradiogram
Reference	Boyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs	cdo400 [ Show all 8 ]
Probe for Locus	CDO400
Locus	CDO400b [ Show all 12 ]
Synonym	Synonym HAR35_19904
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c]
Type	cDNA
Sequence	BE439060 [ Show all 6 ]
Polymorphism	CDO400 DraI
Linkage Group	1L, 5L
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	0.8
PCR size	0.8