GrainGenes Marker Report: Xcdo395a
Locus
Xcdo395a
Type
RFLP
Map
Avena-Sorrells-A 112.3
[ Show all 7 ]
[ Show Nearby Loci ]
QTL with Locus Marker
Groat percentage, KxO-32-b Test weight, KxO-32-c
Map Data
[ Hide all but 1 of 7 ] Diploid Oat, AFLP Diploid Oat, Cornell2 Oat, KxO Oat, KxO, AFLP Oat, KxO/QTL Oat-2001-KxO Oat-2003-OglexMAM17-5
Probe
CDO395
Homology
NP_043787.1 e-value: 0.98 capsid protein [Human herpesvirus 7] YPT2_MAIZE e-value: 3e-14 GTP-BINDING PROTEIN YPTM2
Image
CDO395 KO autoradiogram
Reference
Jin H et al. (2000) Combined AFLP and RFLP mapping in two hexaploid oat recombinant inbred populations Genome 94-101.
Possible Orthologs
cdo395
[ Show all 15 ]
Probe for Locus
CDO395
Locus
cdo395
[ Show all 16 ]
Synonym
Synonym HAR35_16251 HAR35_16252 HAR35_29914
External Databases
DDBJ EMBL GenBank
Reference
Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks
Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type
cDNA STS
PCR primers
ACC CCA TCG GTC TGT CTA TG
AAC TCG GTC GTT ACA AGA GC
Sequence
BE439071
[ Show all 7 ]
Polymorphism
CDO395 EcoRI Durums CDO395 EcoRI CDO395 EcoRV
Linkage Group
3S [b 3S] 3S [b 3S]
Insert Enzyme
EcoRI XhoI
Source Species
Avena sativa
Source Germplasm
Brooks (oat)
Source Tissue
etiolated leaf
Insert Size
1
PCR size
1
GrainGenes Marker Report: Xcdo395a
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