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GrainGenes Marker Report: Xcdo1199

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Locus	Xcdo1199
Type	RFLP
Chromosome	7D
Chromosome Arm	7DL
Map	Oat-2003-OglexMAM17-5_12 35 Ta-Physical-Gill-7ABD 22
	[ Show Nearby Loci ]
Breakpoint Interval	7L-0.20-0.24
Map Data	Oat-2003-OglexMAM17-5 Wheat, Physical
Species	Triticum aestivum
Probe	CDO1199
Homology	TRP1_MAIZE e-value: 3e-08 TRYPTOPHAN SYNTHASE BETA CHAIN 1 (ORANGE PERICARP 1) TRP1_MAIZE e-value: 8e-34 TRYPTOPHAN SYNTHASE BETA CHAIN 1 (ORANGE PERICARP 1)
Reference	Boyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs	[ Hide all but 1 of 10 ] CDO1199 cdo1199a cdo1199b Xcdo1199-7A Xcdo1199A Xcdo1199B CDO1199B CDO1199A cdo1199c Xcdo1199c
Probe for Locus	CDO1199
Locus	Xcdo1199A [ Show all 12 ]
Synonym	Synonym HAR35_1402
Reference	Wight CP et al. (2004) Discovery, localization, and sequence characterization of molecular markers for the crown rust resistance genes Pc38, Pc39, and Pc48 in cultivated oat (Avena sativa L.) Molecular Breeding 14:349-361. Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Uni-ZAP XR library OatUni-ZAPXR [c] OatUni-ZAPXR
Type	cDNA
Sequence	BE439152 BE439220 CDO1199_WHE03C05.s1 CDO1199_WHE03C05.r1 CN180768
Polymorphism	CDO1199 EcoRI Durums CDO1199 EcoRI
Linkage Group	7L
Insert Enzyme	EcoRI XhoI
Source Species	Avena sativa
Source Germplasm	Brooks (oat)
Source Tissue	etiolated leaf
Insert Size	1.2
PCR size	1.2