Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: Xbcd98-1R

[Submit comment/correction]

Locus	Xbcd98-1R
Type	RFLP
Chromosome	1R
Map	Secale-N6xN2-2004-1R 27.5 Secale-N7xN2-2004-1R 13.8 Secale-N7xN6-2004-1R 6.9
	[ Show Nearby Loci ]
Map Data	Rye, N6 x N2, 2004 Rye, N7 x N2, 2004 Rye, N7 x N6, 2004
Species	Secale cereale
Probe	BCD98
Homology	AAF35955.1 e-value: 3e-42 (AC024128) unknown protein [Arabidopsis thaliana] AAF35955.1 e-value: 2e-46 (AC024128) unknown protein [Arabidopsis thaliana]
Reference	Khlestkina EK et al. (2004) Mapping of 99 new microsatellite-derived loci in rye (Secale cereale L.) including 39 expressed sequence tags Theoretical and Applied Genetics 109:725-732.
Possible Orthologs	BCD098 [ Show all 23 ]
Probe for Locus	BCD98
Locus	[ Hide all but 1 of 29 ] BCD98 Xbcd98-1 Xbcd98-7B Xbcd98 Xbcd98-1A Xcnl.BCD98 RI049N16 RI025P5 RI024E4 D1.1_ctg3913 D1.1_ctg8092 Xbcd98-1B BCD98B Xbcd98-1A.1 Xbcd98-1A.2 Xbcd98A Xbcd98B BCD098 Xbcd98.1 Xbcd98.2 Xbcd98-1R Xbcd98-1D BCD098-1H Xbcd98-5A Xbcd98-1U BCD098A bcd98-1A bcd98-7B bcd98
Related Probe	CDO99
	Hybridization_homologue: The two clones were isolated independently but exhibit the same RFLP patterns when hybridized to DNA from test genotypes, and thus are closely related in sequence.
Reference	Heun M et al. (1991) Construction of a restriction fragment length polymorphism map for barley (Hordeum vulgare) Genome 34:437-447.
General Remarks	Lambda ZAP II library Bar.LambZAPII [c] Bar.LambZAPII
Type	cDNA
Sequence	BE438826 [ Show all 8 ]
Polymorphism	BCD98 EcoRI Durums BCD98 EcoRI BCD98 XbaI
Linkage Group	1S, 7S, 5H 1S,7S[b 5LS]
Insert Enzyme	EcoRI
Source Species	Hordeum vulgare
Source Germplasm	Willis
Source Tissue	etiolated leaf
Insert Size	1.3
PCR size	1.3