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GrainGenes Marker Report: WG530

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Locus	WG530
Type	RFLP
Synonym	Synonym WG530
Chromosome	5H
Chromosome Arm	5HL
Map	Barley-Consensus-5H 2.5 [ Show all 21 ]
	[ Show Nearby Loci ]
Map Data	[ Hide all but 1 of 22 ] Barley consensus Barley consensus 2 Barley, Abiotic QTL Consensus Barley, Agronomic QTL Consensus Barley, BinMap 2005 Barley, Consensus 2005, SNP Barley, Consensus 2006, DArT Barley, Consensus 2006, Marcel Barley, Consensus 2007, SSR Barley, Consensus 2023, FHB Barley, CxS Barley, GxH Barley, Integrated, Marcel 2009 Barley, OPA 2009, Consensus Barley, Pilot OPA1, Consensus Barley, Steptoe x Morex, SNP Barley, Steptoe x Morex, SSAP Barley, SxM Barley, SxM basemap Barley, SxM, Feed QTLs T.tauschii Wheat chromosome arm map
Species	Hordeum vulgare
Probe	WG530
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Varshney RK et al. (2007) A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics 114:1091. Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19 Close, Timothy J.
Remark	Number of populations contributing to the placement of WG530 in the Barley, Consensus 2006 DArT maps = 2 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex Locus in 'Barley, Consensus 2007, SSR' was a BIN marker in 'Barley, Consensus 2006, Marcel'
Possible Orthologs	CSU001wg530-2 Xcnl.WG530
Probe	WG530
Locus	WG530 [ Show all 10 ]
External Databases	DDBJ EMBL GenBank
Type	Genomic STS
PCR primers	GAG ACC AAA GAT TCA ACA GC CAA TGC TCC AAA TCT CAC CA
Sequence	WG530 WG530-5
Linkage Group	[b 7LS]
Insert Enzyme	PstI
Source Species	Triticum aestivum
Source Germplasm	Chinese Spring
Insert Size	1