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GrainGenes Marker Report: RbcS

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Gene	rbcS
Candidate Locus	Xpsr109(RbcS)
Gene Product	ribulose-1,5-bisphosphate carboxylase small subunit ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit
Sequence	[ Hide all but 1 of 86 ] AB020926 AB020926_1.cds AB020927 AB020927_1.cds AB020928 AB020928_1.cds AB020929 AB020929_1.cds AB020930 AB020930_1.cds AB020931 AB020931_1.cds AB020932 AB020932_1.cds AB020933 AB020933_1.cds AB020934 AB020934_1.cds AB020935 AB020935_1.cds AB020936 AB020936_1.cds AB020937 AB020937_1.cds AB020938 AB020938_1.cds AB020942 AB020942_1.cds AB020945 AB020945_1.cds AB020946 AB020946_1.cds AB020947 AB020947_1.cds AB020948 AB020948_1.cds AB020949 AB020949_1.cds AB020950 AB020950_1.cds AB020951 AB020951_1.cds AB020952 AB020952_1.cds AB020953 AB020953_1.cds AB020959 AB020959_1.cds AF096617 AF096617_1.cds AF097359 AF097359_1.cds AF097360 AF097360_1.cds AF097361 AF097361_1.cds AF104249 AF104249_1.cds AF104250 AF104250_1.cds AF192773 AF192773_1.cds AF192774 AF192774_1.cds AF192775 AF192775_1.cds AF192776 AF192776_1.cds AF192777 AF192777_1.cds AF192778 AF192778_1.cds AF192779 AF192779_1.cds AF192780 AF192780_1.cds AF200303 AF200303_1.cds AF202645 AF202645_1.cds AF202646 AF202646_1.cds AF202647 AF202647_1.cds AF202648 AF202648_1.cds
Locus Candidate for Gene	Xpsr109(RbcS)
Type	RFLP
Chromosome	2A 2D
Chromosome Arm	2DS
Map	Ta-Physical-Gill-2ABD -92 Tm-Dubcovsky2-2A -27.6 Wheat-Composite2004-2A 28
	[ Show Nearby Loci ]
Breakpoint Interval	2S-0.84-1.00
Map Data	T. monococcum, DV92 x G3116 Wheat, Composite, 2004 Wheat, Physical
Species	Triticum aestivum
Probe	PSR109
Candidate Gene	rbcS
Reference	Boyko EV et al. (1999) A high-density genetic linkage map of Aegilops tauschii, the D-genome progenitor of bread wheat. Theoretical and Applied Genetics 99:16-26.
Possible Orthologs	Xpsr109 [ Show all 19 ]
Locus	RbcS
Type	Gene RFLP
Synonym	Synonym RbcS (Hordeum)
Chromosome	2H
Chromosome Arm	2HS
Map	Barley-Consensus-2H -41.3 [ Show all 14 ]
	[ Show Nearby Loci ]
QTL with Locus Marker	QHd.StMo-2H.1 QHt.StMo-2H.1 QMe.StMo-2H.2 QYld.StMo-2H.1
Map Data	Barley consensus [ Show all 14 ]
Probe	pKG4626 PSR109
Associated Gene	RbcS (Hordeum)
Candidate Gene	RbcS (Hordeum)
Gene Class	Ribulose bisphosphate carboxylase small subunit
Reference	Wenzl P et al. (2006) A high-density consensus map of barley linking DArT markers to SSR, RFLP and STS loci and agricultural traits BMC Genomics 7:206. Rodriguez M et al. (2006) Integration of retrotransposons-based markers in a linkage map of barley. Molecular Breeding 17:173-184. Rostoks N et al. (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics 274:515-527.
Data Source	Blake, Tom 05.04.19
Remark	Number of populations contributing to the placement of RbcS in the Barley, Consensus 2006 DArT maps = 1 Bin on the 'Barley, Integrated, Marcel 2009' Map Set : 'chromosome_kleinhofs & graner BIN nb.subBIN nb' Mapping population(s) used for locus placement on the 'Barley, Integrated, Marcel 2009' Map Set = Steptoe x Morex Loci in 'Barley, Consensus 2006, Marcel' mapped in population(s) : Steptoe x Morex
Probe for Locus	pKG4626
Locus	RbcS
Synonym	Other name ABC311
Reference	Barkardottir RB et al. (1987) Expression of selected nuclear genes during leaf development in barley. Developmental Genetics 8:495-511.
Linkage Group	2
Source Gene Class	Ribulose bisphosphate carboxylase small subunit
Source Species	Hordeum vulgare
Insert Size	0.8