Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_1392

[Submit comment/correction]

Locus	POPA3_1392
Type	SNP
Synonym	Synonym 12_31392
Chromosome	6H
Chromosome Arm	6HL
Map	Hordeum-OPA-2009-6H 119.02 Hordeum-OPA123-2008-6H 119.02 Hordeum-OPAConsensus-2011-6H 127.76 Hordeum-OWB-OPA2008-6H 149.926
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_3529
Reference	Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_1392 Marker name in barley OPA1 = 12_31392 Original SNP name = U35_3529_1428 Most representative HarvEST:Barley Assembly #32 Unigene = 13083 Most representative HarvEST:Barley Assembly #35 Unigene = 3529 HarvEST Unigene 35 Probe Set = Contig15753_at Unigene 35 Rice Locus = LOC_Os02g56920 Description for best rice BLAST hit to Unigene 35 member = CER1, putative, expressed; E value = 1E-168 Marker name in barley Pilot OPA3 = 3_1392 Marker name in barley OPA2 = 12_31392 Original SNP name = U32_12621_275 Description for best rice BLAST hit to Unigene 35 member = protein CER1, putative, expressed; E value = 1E-168 BLAST hit in the rice genome = CER1, putative, expressed
Probe for Locus	HAR35_3529
Locus	POPA3_1392
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare