Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_1010

[Submit comment/correction]

Locus	POPA3_1010
Type	SNP
Synonym	Other name 12_31010 BOPA2_12_31010 Synonym 12_31010
Chromosome	3H
Chromosome Arm	3HO
Map	Hordeum-OPA-2009-3H 55.57 Hordeum-OPA123-2008-3H 55.57 Hordeum-OPAConsensus-2011-3H 67.86
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_7258 i_12_31010
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 3_1010 Marker name in barley OPA1 = 12_31010 Original SNP name = SCRI_olad_178_02 Most representative HarvEST:Barley Assembly #32 Unigene = 12778 Most representative HarvEST:Barley Assembly #35 Unigene = 7258 HarvEST Unigene 35 Probe Set = Contig15394_at Unigene 35 Rice Locus = Description for best rice BLAST hit to Unigene 35 member = ; E value = Marker name in barley Pilot OPA3 = 3_1010 Marker name in barley OPA2 = 12_31010
Probe for Locus	HAR35_7258
Locus	POPA3_1010
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare