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GrainGenes Marker Report: POPA3_0984

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Locus	POPA3_0984
Type	SNP
Synonym	Other name 12_30984 BOPA2_12_30984 Synonym 12_30984
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 4.24 Hordeum-OPA123-2008-5H 4.24 Hordeum-OPAConsensus-2011-5H 3.41 Hordeum-OWB-OPA2008-5H 4.396
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14663 i_12_30984
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0984 Marker name in barley OPA1 = 12_30984 Original SNP name = SCRI_hinb_2135 Most representative HarvEST:Barley Assembly #32 Unigene = 1172 Most representative HarvEST:Barley Assembly #35 Unigene = 14663 HarvEST Unigene 35 Probe Set = Contig231_x_at; HB04N02r_x_at Unigene 35 Rice Locus = LOC_Os06g31070 Description for best rice BLAST hit to Unigene 35 member = prolamin PPROL 17 precursor, putative, expressed; E value = 0.00000002 Marker name in barley Pilot OPA3 = 3_0984 Marker name in barley OPA2 = 12_30984 HarvEST Unigene 35 Probe Set = Contig231_x_at, HB04N02r_x_at Description for best rice BLAST hit to Unigene 35 member = protein prolamin PPROL 17 precursor, putative, expressed; E value = 0.00000002 BLAST hit in the rice genome = prolamin PPROL 17 precursor, putative, expressed
Probe for Locus	HAR35_14663
Locus	POPA3_0981 [ Show all 6 ]
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare