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GrainGenes Marker Report: POPA3_0934

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Locus	POPA3_0934
Type	SNP
Synonym	Other name 12_30934 BOPA2_12_30934 Synonym 12_30934
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 133.1 Hordeum-OPA-2009-1H 140.53 Hordeum-OPA123-2008-1H 140.53 Hordeum-OPAConsensus-2011-1H 143.2
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14389 i_12_30934
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 14 ] Marker name in barley Pilot OPA1 = 3_0934 Marker name in barley OPA1 = 12_30934 Original SNP name = SCRI_bbc01078_01_1 Most representative HarvEST:Barley Assembly #32 Unigene = 1078 Most representative HarvEST:Barley Assembly #35 Unigene = 14389 HarvEST Unigene 35 Probe Set = Contig1625_at; Contig1625_s_at; HS17I13u_s_at Unigene 35 Rice Locus = LOC_Os05g51830 Description for best rice BLAST hit to Unigene 35 member = histone deacetylase 2b, putative, expressed; E value = 1E-101 Marker name in barley Pilot OPA3 = 3_0934 Marker name in barley OPA2 = 12_30934 Original SNP name = ABC06164_1_175 HarvEST Unigene 35 Probe Set = Contig1625_at, Contig1625_s_at, HS17I13u_s_at Description for best rice BLAST hit to Unigene 35 member = protein histone deacetylase 2b, putative, expressed; E value = 1E-101 BLAST hit in the rice genome = histone deacetylase 2b, putative, expressed
Probe for Locus	HAR35_14389
Locus	POPA3_0934 POPA3_0935 POPA1_0029 POPA2_0046 POPA3_0936
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare