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GrainGenes Marker Report: POPA3_0926

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Locus
POPA3_0926
Type
SNP
Synonym
Other name12_30926
BOPA2_12_30926
Synonym12_30926
Map Data
Barley, OPA 2009, Consensus
Species
Hordeum vulgare
Probe
HAR35_28600
i_12_30926
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
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Marker name in barley Pilot OPA1 = 3_0926
Marker name in barley OPA1 = 12_30926
Original SNP name = SCRI_abc27575_01_1
Most representative HarvEST:Barley Assembly #32 Unigene = 24637
Most representative HarvEST:Barley Assembly #35 Unigene = 28600
HarvEST Unigene 35 Probe Set =
Unigene 35 Rice Locus = LOC_Os01g67370
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 4E-65
BLAST hit in the rice genome = expressed protein



Probe for Locus
HAR35_28600
Locus
POPA3_0926