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GrainGenes Marker Report: POPA3_0916

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Locus	POPA3_0916
Type	SNP
Synonym	Other name 12_30916 BOPA2_12_30916 Synonym 12_30916
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_16734 i_12_30916
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 3_0916 Marker name in barley OPA1 = 12_30916 Original SNP name = SCRI_abc08244_01_1 Most representative HarvEST:Barley Assembly #32 Unigene = 6195 Most representative HarvEST:Barley Assembly #35 Unigene = 16734 HarvEST Unigene 35 Probe Set = Contig8244_s_at Unigene 35 Rice Locus = LOC_Os05g01240 Description for best rice BLAST hit to Unigene 35 member = AML6, putative, expressed; E value = 1E-105 BLAST hit in the rice genome = AML6, putative, expressed
Probe for Locus	HAR35_16734
Locus	POPA2_1067 POPA3_0916 POPA3_0917
Synonym	Synonym BCD1434 BCD1482
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare