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GrainGenes Marker Report: POPA3_0841

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Locus
POPA3_0841
Type
SNP
Synonym
Synonym12_30841
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H151.22
Hordeum-OPA123-2008-3H151.22
Hordeum-OPAConsensus-2011-3H159.54
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Probe
HAR35_267
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0841
Marker name in barley OPA1 = 12_30841
Original SNP name = OSU_Glb34_1_37_73
Most representative HarvEST:Barley Assembly #32 Unigene = 1087
Most representative HarvEST:Barley Assembly #35 Unigene = 267
HarvEST Unigene 35 Probe Set = Contig1641_at
Unigene 35 Rice Locus = LOC_Os01g71380
Description for best rice BLAST hit to Unigene 35 member = glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed; E value = 1E-121
Marker name in barley Pilot OPA3 = 3_0841
Marker name in barley OPA2 = 12_30841
Description for best rice BLAST hit to Unigene 35 member = protein glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed; E value = 1E-121
BLAST hit in the rice genome = glucan endo-1,3-beta-glucosidase GII precursor, putative, expressed



Probe for Locus
HAR35_267
Locus
POPA2_1531
POPA3_0841
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare