Query (optional)   in Class  

GrainGenes Marker Report: POPA3_0781

[Submit comment/correction]

Locus
POPA3_0781
Type
SNP
Synonym
Other name12_30781
BOPA2_12_30781
Synonym12_30781
Chromosome
2H
Chromosome Arm
2HS
Map
Barley, 2012 9KSNP 2H7.4
Hordeum-OPA-2009-2H8.57
Hordeum-OPA123-2008-2H8.57
Hordeum-OPAConsensus-2011-2H9.12
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_5737
i_12_30781
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 3_0781
Marker name in barley OPA1 = 12_30781
Original SNP name = U32_9193_552
Most representative HarvEST:Barley Assembly #32 Unigene = 9193
Most representative HarvEST:Barley Assembly #35 Unigene = 5737
HarvEST Unigene 35 Probe Set = Contig11963_s_at
Unigene 35 Rice Locus = LOC_Os01g26920
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 9E-88
Marker name in barley Pilot OPA3 = 3_0781
Marker name in barley OPA2 = 12_30781
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 9E-88
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_5737
Locus
POPA3_0781
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare