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GrainGenes Marker Report: POPA3_0654

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Locus	POPA3_0654
Type	SNP
Synonym	Other name 12_30654 BOPA2_12_30654 Synonym 12_30654
Chromosome	5H
Chromosome Arm	5HS
Map	Barley, 2012 9KSNP 5H 41.8 Hordeum-OPA-2009-5H 46.23 Hordeum-OPA123-2008-5H 46.23 Hordeum-OPAConsensus-2011-5H 38.78
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_18263 i_12_30654
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0654 Marker name in barley OPA1 = 12_30654 Original SNP name = U32_6548_1115 Most representative HarvEST:Barley Assembly #32 Unigene = 6548 Most representative HarvEST:Barley Assembly #35 Unigene = 18263 HarvEST Unigene 35 Probe Set = Contig8479_at; EBro08_SQ012_O08_s_at; HVSMEn0009P16f2_s_at Unigene 35 Rice Locus = LOC_Os12g41190 Description for best rice BLAST hit to Unigene 35 member = TPR Domain containing protein, expressed; E value = 1E-160 Marker name in barley Pilot OPA3 = 3_0654 Marker name in barley OPA2 = 12_30654 HarvEST Unigene 35 Probe Set = Contig8479_at, EBro08_SQ012_O08_s_at, HVSMEn0009P16f2_s_at Description for best rice BLAST hit to Unigene 35 member = protein TPR Domain containing protein, expressed; E value = 1E-160 BLAST hit in the rice genome = TPR Domain containing protein, expressed
Probe for Locus	HAR35_18263
Locus	POPA3_0654
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare