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GrainGenes Marker Report: POPA3_0630

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Locus	POPA3_0630
Type	SNP
Synonym	Other name 12_30630 BOPA2_12_30630 Synonym 12_30630
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 91.9 Hordeum-OPA-2009-7H 103.62 Hordeum-OPA123-2008-7H 103.62 Hordeum-OPAConsensus-2011-7H 105.73
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16861 i_12_30630
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 14 ] Marker name in barley Pilot OPA1 = 3_0630 Marker name in barley OPA1 = 12_30630 Original SNP name = U32_6040_1142 Most representative HarvEST:Barley Assembly #32 Unigene = 6040 Most representative HarvEST:Barley Assembly #35 Unigene = 16861 HarvEST Unigene 35 Probe Set = Contig8111_at; Contig8113_s_at Unigene 35 Rice Locus = LOC_Os11g09310 Description for best rice BLAST hit to Unigene 35 member = zinc finger CCHC domain-containing protein 10, putative, expressed; E value = 1E-100 Marker name in barley Pilot OPA3 = 3_0630 Marker name in barley OPA2 = 12_30630 Original SNP name = U35_20364_468 HarvEST Unigene 35 Probe Set = Contig8111_at, Contig8113_s_at Description for best rice BLAST hit to Unigene 35 member = protein zinc finger CCHC domain-containing protein 10, putative, expressed; E value = 1E-100 BLAST hit in the rice genome = zinc finger CCHC domain-containing protein 10, putative, expressed
Probe for Locus	HAR35_16861
Locus	POPA3_0630
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare