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GrainGenes Marker Report: POPA3_0618

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Locus	POPA3_0618
Type	SNP
Synonym	Other name 12_30618 BOPA2_12_30618 Synonym 12_30618
Chromosome	3H
Chromosome Arm	3HS
Map	Barley, 2012 9KSNP 3H 51.2 Hordeum-OPA-2009-3H 53.27 Hordeum-OPA123-2008-3H 53.27 Hordeum-OPAConsensus-2011-3H 64.6
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_17691 i_12_30618
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0618 Marker name in barley OPA1 = 12_30618 Original SNP name = U32_5814_1420 Most representative HarvEST:Barley Assembly #32 Unigene = 5814 Most representative HarvEST:Barley Assembly #35 Unigene = 17691 HarvEST Unigene 35 Probe Set = Contig7860_at Unigene 35 Rice Locus = LOC_Os01g16220 Description for best rice BLAST hit to Unigene 35 member = sad1/unc-84-like protein 2, putative, expressed; E value = 1E-179 Marker name in barley Pilot OPA3 = 3_0618 Marker name in barley OPA2 = 12_30618 Description for best rice BLAST hit to Unigene 35 member = protein sad1/unc-84-like protein 2, putative, expressed; E value = 1E-179 BLAST hit in the rice genome = sad1/unc-84-like protein 2, putative, expressed
Probe for Locus	HAR35_17691
Locus	POPA3_0618
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare