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GrainGenes Marker Report: POPA3_0403

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Locus	POPA3_0403
Type	SNP
Synonym	Other name 12_30403 BOPA2_12_30403 Synonym 12_30403
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 119.1 Hordeum-OPA-2009-1H 126.48 Hordeum-OPA123-2008-1H 126.48 Hordeum-OPAConsensus-2011-1H 128.04
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_214 i_12_30403
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 3_0403 Marker name in barley OPA1 = 12_30403 Original SNP name = U32_185_829 Most representative HarvEST:Barley Assembly #32 Unigene = 185 Most representative HarvEST:Barley Assembly #35 Unigene = 214 HarvEST Unigene 35 Probe Set = Contig254_x_at; Contig526_x_at; HB07K19r_x_at; HVSMEl0014O24f_x_at Unigene 35 Rice Locus = LOC_Os06g32550 Description for best rice BLAST hit to Unigene 35 member = leaf-specific thionin BTH6 precursor, putative, expressed; E value = 3E-23 Marker name in barley Pilot OPA3 = 3_0403 Marker name in barley OPA2 = 12_30403 HarvEST Unigene 35 Probe Set = Contig254_x_at, Contig526_x_at, HB07K19r_x_at, HVSMEl0014O24f_x_at Description for best rice BLAST hit to Unigene 35 member = protein leaf-specific thionin BTH6 precursor, putative, expressed; E value = 3E-23 BLAST hit in the rice genome = leaf-specific thionin BTH6 precursor, putative, expressed
Probe for Locus	HAR35_214
Locus	POPA3_0403
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare