GrainGenes Marker Report: POPA3_0196
Locus
POPA3_0196
Type
SNP
Chromosome
7H
Chromosome Arm
7HS
Map
Barley-Core-2014_7H 2.86 Hordeum-OPA-2009-7H 1.89 Hordeum-OPA123-2008-7H 1.89 Hordeum-OPAConsensus-2011-7H 2.13
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_5047
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 3_0196 Most representative HarvEST:Barley Assembly #32 Unigene = 9175 Most representative HarvEST:Barley Assembly #35 Unigene = 5047 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os12g26290 Description for best rice BLAST hit to Unigene 35 member = alpha-DOX2, putative, expressed; E value = 0 Marker name in barley Pilot OPA3 = 3_0196 Original SNP name = ABC12121_1_948 Description for best rice BLAST hit to Unigene 35 member = protein alpha-DOX2, putative, expressed; E value = 0 BLAST hit in the rice genome = alpha-DOX2, putative, expressed
Probe for Locus
HAR35_5047
Locus
POPA3_0196
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA3_0196
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