Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA3_0193

[Submit comment/correction]

Locus	POPA3_0193
Type	SNP
Synonym	Other name 12_30193 BOPA2_12_30193 Synonym 12_30193
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 44.8 Hordeum-OPA-2009-5H 51.6 Hordeum-OPA123-2008-5H 51.6 Hordeum-OPAConsensus-2011-5H 42.41
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_5035 i_12_30193
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0193 Marker name in barley OPA1 = 12_30193 Original SNP name = ABC12038_1_1_682 Most representative HarvEST:Barley Assembly #32 Unigene = 9145 Most representative HarvEST:Barley Assembly #35 Unigene = 5035 HarvEST Unigene 35 Probe Set = Contig12038_at Unigene 35 Rice Locus = LOC_Os11g01790 Description for best rice BLAST hit to Unigene 35 member = catalytic/ protein phosphatase type 2C, putative, expressed; E value = 1E-89 Marker name in barley Pilot OPA3 = 3_0193 Marker name in barley OPA2 = 12_30193 Description for best rice BLAST hit to Unigene 35 member = protein catalytic/ protein phosphatase type 2C, putative, expressed; E value = 1E-89 BLAST hit in the rice genome = catalytic/ protein phosphatase type 2C, putative, expressed
Probe for Locus	HAR35_5035
Locus	POPA3_0193
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare